Reasons to Believe 
Interdenominational apologetic ministry aiming to show that science and the Bible complement one another, led by Hugh Ross, Fazale Rana, and Kenneth Richard Samples. Articles, webcasts, and forthcoming events.
http://www.reasons.org/John Ray Initiative 
Educational charity bringing together scientific and Christian understandings of the environment. Includes articles, reports from conferences, and a newsletter.
http://www.jri.org.uk/
Window View 
Author aims to build a holistic paradigm based on science and scripture.
http://www.windowview.org/
The Unicorn Site 
Summaries of fiction and non-fiction books and other writings by Dr. L. Steven Cheairs that address the common elements of science and Christian thought.
http://hometown.aol.com/scheairs/UnicornSite/Unicorn_Forest.html
Science and Christianity - Allies or Enemies? 
Small collection of articles on the Big Bang, astronomy, and the age of the Earth.
http://homepages.tcp.co.uk/~carling/main_sci.html
God and Science 
Commentary on Darwin, Marx, Freud, Tillich, Chardin, creationism, evolution, quantum mechanics from Charles Henderson's book. Most of the chapters are available online.
http://www.crosscurrents.org/godand.htm
Vatican Observatory 
Ancient astronomical research institution with dependent research center based in Tucson, Arizona. Includes history, profiles of personnel, details of telescopes, and a streaming video on the relation of science and religion.
http://clavius.as.arizona.edu/vo/
Faith and Reason Ministries 
Aims to reconcile Christianity with accepted science. Includes complete text of John Callahan's book "Science and Christianity", and short articles on a selection of other topics.
http://www.faithreason.org/
Foolish Faith 
Complete text of Judah Etinger's book "Foolish Faith", tackling the relationship between science and Christianity.
http://www.foolishfaith.com/
The Warfare of Science With Theology 
Full text of a book published in 1896 by Andrew Dickson White (1832-1918), hosted by Library section of the Secular Web.
http://www.infidels.org/library/historical/andrew_white/Andrew_White.html
Institute for Biblical and Scientific Studies 
Large collection of articles on topics ranging from science and Christianity through to archaeology and biblical sources.
http://bibleandscience.com/
American Scientific Affiliation (ASA) 
Investigating issues relating Christian faith and science. Includes on-line back issues of the journal, and news about the organization.
http://www.asa3.org/
CiS-St Edmunds Lecture Series: Science, Religion, & Society 
Series of Templeton Foundation funded public lectures at St Edmund's College, Cambridge. Includes full text of lectures and subsequent after dinner academic conversations.
http://www.st-edmunds.cam.ac.uk/cis/
Christians in Science 
UK based organization for Christian scientists and students. Includes articles, conference details, newsletter, and membership details.
http://www.cis.org.uk/
Science and Faith 
Collection of links to pages about scientists and their faith, quotations from the Bible, essays, and bibliographies.
http://www.mat.univie.ac.at/~neum/sciandf.html
The Technotheology Project 
Bill Laudeman's attempt to relate physics, cosmology, and chaos theory with orthodox Roman Catholic theology.
http://technotheology.org/
European Society for the Study of Science and Theology (ESSSAT) 
Scholarly non-confessional organization that aims to promote the study of relationships between the natural sciences and theological views. Includes details of publications, awards, and conferences.
http://www.esssat.org/
Scibel 
UK-based charity promoting the understanding between mainstream Christianity and contemporary science. Includes articles, biographies of scientists, book reviews, discussion forum, and the facility to have a faith-science question answered by an expert.
http://scibel.gospelcom.net
Witherspoon on Theology and Science 
Papers by William Witherspoon on the harmony and potential integration of science and theology. Topics include divine action, string theory, human nature, higher dimensions, and miracles.
http://www.wwitherspoon.org
Does Modern Science Invalidate the Bible? 
Article looking at the understanding of medicine and science in the Bible and making a case that it pre-dates man's understanding of medicine and science.
http://everystudent.com/forum/science.html
Articles on the Bible and Science 
An online collection of articles on creation,theistic evolution, the Flood, intelligent design, and other areas where the Bible and science converge.
http://home.att.net/~jamspsu84/ttocartic.html
The Galileo Controversy 
Proposes arguments about the church not being anti-scientific. Also, discusses why Galileo may not have been given more credit than he was for his participation in discovering the heliocentric view of the universe.
http://www.catholic.com/library/galileo_controversy.asp