Good Ear 
Online ear training site.
http://www.good-ear.com/Teoria 
Includes software, books, exercises, and links.
http://www.teoria.com/
The Fugue 
An outline of the fundamentals of a fugue based on Hugo Norden's "Foundation Studies in Fugue."
http://musik.freepage.de/cpb7079/inhalt.html
Ricci Adams' Musictheory.net 
Includes introductory and intermediate music theory lessons, ear trainers, and books.
http://www.musictheory.net/
Star Theory 
Free preparatory syllabus in music theory and orchestration.
http://www.musicarrangers.com/star-theory/
Chordwizard: How Music Works 
A concise summary of important concepts in music.
http://www.chordwizard.com/theory.html
Bimodalism 
A contemporary alternative to atonal styles of composition.
http://www.ubieta.com/bimodalism/
WholeArts - Music Conservatory 
Introductory dialogue for courses in music theory and composition.
http://www.wholarts.com/music/ed/intro.htm
Harmony.org.uk 
By Tom Sutcliffe. Aims to help students of music theory understand the role of chord progressions in musical structures. Site includes animated demos.
http://www.harmony.org.uk/
Society for Music Theory 
Includes a database of journal article from the SMT Journal.
http://www.societymusictheory.org/
Rhythm Exercises 
Notation for drills, rudiments and etudes for practicing rhythm.
http://www.izap.com/~pinnacle/rhythms/
Harmonic Bindings 
A paper about the unification of Janecek's theory of imaginary tones with the two Risinger's principles of functional relations.
http://www.sweb.cz/vladimir_ladma/english/music/articles/ifsa97.htm
The Basics of Reading Music 
Online tutorial by Kevin Meixner.
http://www.notationmachine.com/how_to_read_sheetmusic/readingmusic.htm
Gems of Compositional Wisdom 
Articles on advanced atonal and serial concepts.
http://www.cosmoedu.net/DoctorFields/
Technical Committee on Musical Acoustics 
A group within the Acoustical Society of America, that concerns itself with the application of science and technology to the field of music. Contains members, a list of papers, acousticians and links.
http://www.public.coe.edu/~jcotting/tcmu/
SchenkerGuide 
An introduction to Schenkerian analysis for undergraduate music students. Includes background, working method, glossary and bibliography.
http://www.schenkerguide.com/
Dolmetsch: Music Theory & History Online 
Offers a musical dictionary, recorder lessons, instrument information and a composers listing.
http://www.dolmetsch.com/theoryintro.htm
Auto-Transposer 
Transposes all twelve major keys of chord progressions.
http://www.autotransposer.com/
Dynamic Spectrograms of Music 
Provides a type of spectrogram suitable for understanding the structure of music.
http://nastechservices.com/Spectrograms.html
Musica Theoria 
Offers explanation of chords, scales, harmony, tuning systems, counterpoint. Also provides links to ear training sites, news groups and history.
http://mywebpage.netscape.com/zentaoguy/
Pattern Thinking in Music 
Offers visual aid to recognizing musical patterns occurring in melody, harmony and rhythm. Provides online demonstration; requires download.
http://www.seepatts.com/
Polytempo Music Articles 
Articles by John Greschak. Includes an annotated bibliography of polytempo music.
http://www.greschak.com/polytempo/
Skytopia: Music and Art Aesthetics 
Author's overview of how every piece of music, every sound, and every picture can be rated on its own merits outside (as well as inside) human opinion.
http://www.skytopia.com/project/rating.html
The Ancient Musical Modes 
Ideas regarding the "classical modes" described by Plato and Aristotle.
http://www.pathguy.com/modes.htm
The Method Behind the Music 
A resource for music theory, music history, the physics of musical sound, and conducting.
http://www.numbera.com/musictheory/
The Musical Intervals Tutor 
Offers interactive music intervals and self-testing.
http://www.musicalintervalstutor.com/
Visualizing Music: A Model of Harmony 
Visual model of music which geometrically describes relationships in harmony.
http://www.geocities.com/yaaarrrgg/music/
What is Music - Solving a Scientific Mystery 
Provide information on the book by Philip Dorrell which explains a new scientific theory about music: the super-stimulus theory.
http://whatismusic.info/
Music Theory Instruction 
Online instruction for all musicians beginner or advanced. Covers scales, chordal theory, progression theory, modes and foreign scales.
http://www.angelfire.com/music5/theory/
Schoen Musical Notation 
Julius Schoens alternative to traditional musical notation, has music notation documents, reference, and discussion.
http://www.illuschoen.net/sn/sn.htm
Solomon's Music Resources 
Resources for composers, music theorists, and researchers of music, with sound files, papers and compositions.
http://solomonsmusic.net/
eMusicTheory.com 
Java applets designed to help students of music improve their basic music reading skills.
http://www.emusictheory.com/
8-Tone Quarto-Modes Concept 
Information with mp3 files, an introduction to the "diminished-major" and its applications.
http://www.jazcraft.net/8tone.html
Simplified Music Chord Theory 
Explains scales and building chords from them.
http://www.rpsoft2000.com/rps_chordtheory.htm
Chaos Music Paper I: Aesthetic Evaluation 
Essays explaining computer music theory providing detailed analysis.
http://www.freewebs.com/gustavsphinx/
Music Theory for the Short Attention Span 
Essential music theory knowledge, briefly explained.
http://www.folkblues.com/theory/
Tonality Guide 
Fundamentals of tonality and music theory created as an online teaching tool with written and aural examples.
http://www.tonalityguide.com/
Fugue No. 17: A-Flat Major 
Introduction to the essential concepts of Schenkerian analysis applied to the Ab Major fugue of Bach's Well-Tempered Clavier, Book I
http://jan.ucc.nau.edu/~tas3/wtc/i17.html
A Beginner's Guide to Modal Harmony 
A concise explanation of the Gregorian and Renaissance modes and their development in the Common Practice era.
http://www.standingstones.com/modeharm.html
Music Acoustics 
The science of music. Explanations of how musical instruments work via waves and frequency modulation.
http://www.phys.unsw.edu.au/music/
Analysis of Masterpieces 
Analysis of full-music 20th Century atonal pieces.
http://www.geocities.jp/musikanalyse/eng/text/textE.html
The Music Theory Minute 
Online music theory tutorials for beginning students.
http://www.musictheoryminute.com/
Fugue Treatises, Analyses and Tools 
Bibliography of fugue analysis research, writings and analysis.
http://www.kunstderfuge.com/theory.htm
A-Natural Atonality 
Claims that atonality is unnatural while tonality is acoustically and historically natural.
http://www.greenwych.ca/atonal.htm
Modes and Scales in Indian Music 
A historical look at concepts of Indian scales and modes comparing North and South Indian approaches.
http://chandrakantha.com/articles/scales.html
Creativelab 
Visual representations of music expressed in terms of color. In English, Ukrainian and Russian.
http://creativelab.kiev.ua/
Abacci Music Lessons 
Music theory lessons with accompanying MIDI files.
http://www.abacci.com/music/lessons/default.asp
Music Theory 
Covers intermediate and slightly advanced topics in tonal music theory.
http://www.fortunecity.com/tinpan/lennon/23/theory.html
Essentials of Music Theory 
Summarizes entry-level music theory through advanced topics. Includes beginners' drills.
http://musictheory.redzeppelin.org/
VCU Music Theory Resources 
Music theory and ear training resources from Virginia Commonwealth University.
http://www.people.vcu.edu/~bhammel/theory/resources/index.html
Interval and Chord Ear-Training 
This site drills ear-training (aural skills), focusing on the aural recognition of musical sounds, including intervals and chords.
http://www.auralskills.com/
Music Worksheets 
Downloadable worksheets for elementary and middle school students.
http://www.musicatschool.co.uk/worksheets.htm
Theory on the Web 
Intermediate music theory review for college students.
http://www.smu.edu/totw/toc.htm
Music Theory Help Site 
Intermediate music theory help covering basics through beginning formal analysis and counterpoint.
http://www.wmich.edu/mus-history/TheoryHelp/TheoryHelp.html
Sight-Reading Rhythmic Patterns 
Rhythmic exercises with accompanying MIDI files.
http://www.rhythm-patterns.narod.ru/
Eric Weisstein's Treasure Trove of Music 
A reference resource on music theory, covering in brief a vast array of topics.
http://www.ericweisstein.com/encyclopedias/music/
The Tonal Centre 
Interactive site for music composers and theorists which explains and demonstrates some of the key concepts of tonality; including chords, scales, cadences, and modulation.
http://www.tonalcentre.org/
Nuottila 
Online ear training fundamentals site. [Requires Java]
http://www.nuottila.info/2007/
The Musical Octave 
Thomas Váczy Hightower's study of musical scales. Discuses the meta-physical properties of music and the creation of musical scales from an acoustic and mathematical perspective.
http://home22.inet.tele.dk/hightower/
Music Theory Society of New York State 
Provides a forum for the exchange of information and to promote music theory as a scholarly and pedagogical discipline. Site also contains membership and scholarship information as well as open calls for papers.
http://www.ithaca.edu/music/mtsnys/
Music Theory 
A guide to music theory that including chords, scales, music notation and other music theory topics. Has weblog format; includes links as well.
http://www.musictheoryblog.blogspot.com
Interactive Circle of Fifths 
A free music theory tool designed to help musicians interpret chord progressions, easily transpose music to a different key, compose new music, and understand key signatures, scales, and modes.
http://randscullard.com/CircleOfFifths/
Atonal Set Calculator 
Interactive atonal set calculator for pitch class sets and twelve-tone rows. Enter one or two sets and find normal order, prime form, Forte number, interval vector, and symmetry.
http://ericandchar.com/atonal/